Package index
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FUNnormalization_residualMixedModels() - Compute Residuals Using Mixed Models
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calculate_ICC() - Calculate Intraclass Correlation Coefficient (ICC)
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calculate_ICC_parallel() - Calculate Intraclass Correlation Coefficient (ICC) parallel
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check_dataframe_validity() - Validate a Data Frame for LCMD Imputation
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cluster_features_based_on_correlations() - Cluster feature groups based on correlations
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cluster_features_by_retention_time() - Cluster features by retention time and summarise within clusters
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data_check() - check required columns
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data_features - Simulated Dataframe 1
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data_meta_features - Simulated Dataframe 2
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data_meta_samples - Simulated Dataframe 3
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exclude_features() - Exclude features with X misingness
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exclude_samples() - Exclude samples with X missingness
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filter_by_missingness() - Filter a data.frame by missingness in rows and columns
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filter_case_control() - Filter Samples Based on Case Control Criteria
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filter_function_args() - Filter a list to match the formal arguments of a target function
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generate_labels() - generate labels
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get_features_representatives_based_on_scores() - Select representative features per cluster using correlation threshold and scores
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hybrid_imputation() - Hybrid Imputation: Random Forest + LCMD
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impute_data() - Impute missing data in a data frame
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impute_with_half_min() - Impute Missing Values with Half the Minimum
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normalise_SERRF() - SERRF Normalization
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normalization_residualMixedModels() - Normalize feature Data Using Residual Mixed Models
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outlier_pca_lof() - PCA-Based Outlier Detection Using LOF
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parse_mass_rt() - Parse mass/retention-time strings
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process_data() - Process feature data
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register_cluster() - Register a parallel cluster for parallel processing.
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remove_outliers() - Remove outliers (optionally stratified) using PCA + LOF
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resolve_target_cols() - Resolve Target Columns from Names or Regex
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run_lcmd_imputation() - Run LCMD Imputation (Overall)
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run_rf_imputation() - Run Random Forest Imputation with Optional Parallelization
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transform_data() - Apply Data Transformation to Data Frame
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unregister_cluster() - Unregister a parallel cluster used for parallel processing.